If you are using pip to install xarray, optional dependencies can be installed by specifying extras. Instructions for both pip and conda are given below.
For netCDF and IO#
netCDF4: recommended if you want to use xarray for reading or writing netCDF files
scipy: used as a fallback for reading/writing netCDF3
pydap: used as a fallback for accessing OPeNDAP
h5netcdf: an alternative library for reading and writing netCDF4 files that does not use the netCDF-C libraries
PyNIO: for reading GRIB and other geoscience specific file formats. Note that PyNIO is not available for Windows and that the PyNIO backend may be moved outside of xarray in the future.
zarr: for chunked, compressed, N-dimensional arrays.
cftime: recommended if you want to encode/decode datetimes for non-standard calendars or dates before year 1678 or after year 2262.
PseudoNetCDF: recommended for accessing CAMx, GEOS-Chem (bpch), NOAA ARL files, ICARTT files (ffi1001) and many other.
rasterio: for reading GeoTiffs and other gridded raster datasets.
iris: for conversion to and from iris’ Cube objects
cfgrib: for reading GRIB files via the ECMWF ecCodes library.
For accelerating xarray#
For parallel computing#
Alternative data containers#
Minimum dependency versions#
Xarray adopts a rolling policy regarding the minimum supported version of its dependencies:
This means the latest minor (X.Y) version from N months prior. Patch versions (x.y.Z) are not pinned, and only the latest available at the moment of publishing the xarray release is guaranteed to work.
You can see the actual minimum tested versions:
Xarray itself is a pure Python package, but its dependencies are not. The easiest way to get everything installed is to use conda. To install xarray with its recommended dependencies using the conda command line tool:
$ conda install -c conda-forge xarray dask netCDF4 bottleneck
If you require other Optional dependencies add them to the line above.
We recommend using the community maintained conda-forge channel, as some of the dependencies are difficult to build. New releases may also appear in conda-forge before being updated in the default channel.
If you don’t use conda, be sure you have the required dependencies (numpy and pandas) installed first. Then, install xarray with pip:
$ python -m pip install xarray
We also maintain other dependency sets for different subsets of functionality:
$ python -m pip install "xarray[io]" # Install optional dependencies for handling I/O $ python -m pip install "xarray[accel]" # Install optional dependencies for accelerating xarray $ python -m pip install "xarray[parallel]" # Install optional dependencies for dask arrays $ python -m pip install "xarray[viz]" # Install optional dependencies for visualization $ python -m pip install "xarray[complete]" # Install all the above
The above commands should install most of the optional dependencies. However,
some packages which are either not listed on PyPI or require extra
installation steps are excluded. To know which dependencies would be
installed, take a look at the
[options.extras_require] section in
[options.extras_require] io = netCDF4 h5netcdf scipy pydap zarr fsspec cftime rasterio cfgrib pooch ## Scitools packages & dependencies (e.g: cartopy, cf-units) can be hard to install # scitools-iris accel = scipy bottleneck numbagg flox parallel = dask[complete] viz = matplotlib seaborn nc-time-axis ## Cartopy requires 3rd party libraries and only provides source distributions ## See: https://github.com/SciTools/cartopy/issues/805 # cartopy complete = %(io)s %(accel)s %(parallel)s %(viz)s docs = %(complete)s sphinx-autosummary-accessors sphinx_rtd_theme ipython ipykernel jupyter-client nbsphinx scanpydoc
To run the test suite after installing xarray, install (via pypi or conda) py.test and run
pytest in the root directory of the xarray
To run these benchmark tests in a local machine, first install
airspeed-velocity: a tool for benchmarking Python packages over their lifetime.
asv run # this will install some conda environments in ./.asv/envs